SortingExtractor Widgets Gallery

Here is a gallery of all the available widgets using SortingExtractor objects.

import matplotlib.pyplot as plt

import spikeinterface.extractors as se
import spikeinterface.widgets as sw

First, let’s create a toy example with the extractors module:

recording, sorting = se.toy_example(duration=100, num_channels=1, seed=0, num_segments=1)

plot_rasters()

w_rs = sw.plot_rasters(sorting)

plot_isi_distribution()

w_isi = sw.plot_isi_distribution(sorting, window_ms=150.0, bin_ms=5.0)

plot_autocorrelograms()

w_ach = sw.plot_autocorrelograms(sorting, window_ms=150.0, bin_ms=5.0, unit_ids=[1, 2, 5])

plot_crosscorrelograms()

w_cch = sw.plot_crosscorrelograms(sorting, window_ms=150.0, bin_ms=5.0, unit_ids=[1, 2, 5])

plt.show()

plot_presence()

w_pr = sw.plot_presence(sorting)

plt.show()

Traceback (most recent call last):
  File "/home/docs/checkouts/readthedocs.org/user_builds/spikeinterface-test/checkouts/latest/examples/modules_gallery/widgets/plot_2_sort_gallery.py", line 50, in <module>
    w_pr = sw.plot_presence(sorting)
  File "/home/docs/checkouts/readthedocs.org/user_builds/spikeinterface-test/conda/latest/lib/python3.9/site-packages/spikeinterface/widgets/_legacy_mpl_widgets/presence.py", line 131, in plot_presence
    W.plot()
  File "/home/docs/checkouts/readthedocs.org/user_builds/spikeinterface-test/conda/latest/lib/python3.9/site-packages/spikeinterface/widgets/_legacy_mpl_widgets/presence.py", line 70, in plot
    self._do_plot()
  File "/home/docs/checkouts/readthedocs.org/user_builds/spikeinterface-test/conda/latest/lib/python3.9/site-packages/spikeinterface/widgets/_legacy_mpl_widgets/presence.py", line 93, in _do_plot
    time_den.append(gaussian_kde(spiketimes).pdf(time_grid))
NameError: name 'gaussian_kde' is not defined